Wednesday 22 May 2024
Biomedical Research Foundation, Academy of Athens (BRFAA) |
09:00-12:40 |
Computer-aided drug design
Chair: Evi Gkeka |
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09:00-09:30 |
José Duca, Novartis Institutes of Biomedical Research, USA, “Modeling the undruggable; from the computer to the clinic” |
09:30-10:00 |
Marco De Vivo, Italian Institute of Technology, Italy, “Targeting the conserved active site of splicing machines” |
10:00-10:30 |
Thomas Mavromoustakos, University of Athens, Greece, “Computational Analysis and Drug Discovery” |
10:30-11:00 |
Coffee Break |
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11:00-11:20 |
Minos Matsoukas, University of West Attica, Greece, “Computational approaches in targeting GPCRs and cancer related proteins with small molecules” |
11:20-11:50 |
Serdar Durdagi, Bahçeşehir University, Turkey, “Development of New Virtual Screening Methods Incorporating Artificial Intelligence Approaches to Accelerate the Transition from Preclinical to Clinical Stages in Drug Development” |
11:50-12:20 |
Manos Mikros, University of Athens, Greece, “In silico tools for the discovery and optimization of new bioactive compounds” |
12:10-12:.40 |
Özge Kürkçüoglu, Instabul Technical University, Turkey, “In Silico Identification of Allosteric Sites and Modulators on GPCRs Using Residue Network Model and Site Identification by Ligand Competitive Saturation” |
12:40-14:00 |
Lunch Break and Poster Session |
14:00-17:30 |
Nucleic Acids Modeling
Chair: Thomas Cheatham |
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14:00-14:30 |
Modesto Orozco, University of Barcelona, Spain, “Frontiers in molecular dynamics of nucleic acids” |
14:30-15:00 |
Evi Gkeka, Sanofi, France, “Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN” |
15:00-15:20 |
Nathalie Basdevant, Université d’Evry Paris Saclay, France, “DNA translocation through alpha-hemolysin nanopore using the MARTINI coarse-grained force field” |
15:20-15:40 |
Maxime Kermarrec, Ecole Normale Supérieure de Lyon, France, “Mapping the Radical Cation Guanine in the nucleosomal DNA using QM/MM approaches” |
15:40-16:00 |
Coffee Break |
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16:00-16:30 |
Alessandra Magistrato, Trieste SISSA, Italy, “Molecular Mechanisms of RNA Metabolism” |
16:30-17:00 |
Vlad Cojocaru, Universitatea Babes-Bolyai, Romania, “Transcription factors meet chromatin under the computational nanoscope” |
17:00-17:30 |
Sarah Harris, University of Leeds UK, “Multi-Scale Simulations of DNA Supercoiling” |
17:30-18:05 |
Flash Talks
Chair: Klaus Liedl |
Isidora Diakogiannaki, University of Naples Federico II, Italy, “Modeling A40s Aptamer for Advancing Glioblastoma Therapy” |
Petr Jurečka, Palacky University Olomouc, Czech Republic, “Developing Force Field for Nucleic Acids Simulations – Both Canonical and Non-canonical” |
Gianfranco Martino, University of Bologna, Italy, “MD simulatons identify precise and dynamic protein cooperation for the spliceosomal splicing” |
Fethiye Aylin Sungur, Istanbul Technical University, Turkey, “A Multiscale Modelling Study to Elucidate the Citrullination Reaction of the Protein Arginine Deiminase 2 and Identifying New Hit Compounds” |
Roxana Geanina Vasarhelyi, Babes-Bolyai University, Romania, “Exploring RNA-protein interactions: from binding modes to sequence specificity through molecular docking and simulations“ |
Alessia Visigalli, Italian Institute of Technology, Italy, “Molecular Dynamics Simulations to study translocation in Human DNA Polymerase” |
Merve Yuce, Istanbul Technical University, Turkey, “Identification of Potent E. coli Ribosome Inhibitors Using a Computationally Efficient Workflow” |
18.05-19:30 |
ISQBP Business Meeting |
20:30 |
Conference dinner |